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Sector 01 · AI Tools

Tools your agent installs by itself.

Scientific tools with inspectable outputs and human review interfaces. Agent integration and supported platforms are specific to each tool; read its capability and release record before installing.

The AROS team develops and maintains capabilities alongside the platform. This catalog presents current offerings and provides a starting point for a wider creator ecosystem.

Commercial plans and pilot fees are being validated. Catalog prices are indicative; availability and license terms are specific to each package. Commercial checkout is not open.

  • MCP + CLI + SKILL contract
  • Human-auditable GUI
  • Distributed directly by the lab

What the hookup looks like

bash
css agent install --target claude-code
css doctor

One command registers the MCP server and installs the skill; the doctor verifies the environment. From there, your agent does the work.

Example: adopting a tool with the MCP + CLI contract

  1. 1

    Install & register

    One command hooks the tool into your agent: MCP server plus a skill that teaches the workflow.

  2. 2

    Self-check

    A doctor command diagnoses the environment and prints exact fixes — the agent verifies before it works.

  3. 3

    The agent works

    It authors, validates, compiles and runs pipelines headlessly through the tool's own engine.

  4. 4

    A human audits

    Every result lands in a portable session file that opens in the GUI — inspect, correct, re-run.

The catalog

CohortDAG canvas showing a hypertension trial pipeline: a data source node fanning into descriptive statistics, Kaplan-Meier, Cox regression and risk-ratio nodes

CohortDAG

MCP · CLI · SKILL · GUI · BY LABONOM

A desktop visual workflow editor for clinical big-data analysis on Apache Spark. Researchers connect data sources, filters, joins and statistics nodes on a canvas; the compiler emits Spark SQL, the hybrid statistics engine produces Table 1, Kaplan-Meier curves, Cox models and epidemiological measures, and everything saves into a portable .csp session that reopens with results intact.

  • 27 node types
  • Survival & epi statistics
  • 18 MCP tools
  • EN / JA

Windows · macOS · Linux — Electron · Python · Apache Spark

BetaPricing on request
AXIO Stitching Studio dark-themed window showing a stitched triple-fluorescence brainstem section — DAPI blue, FITC green, Rhodamine red — in the Stitched Canvas Preview tab; dataset details read 4 scenes, 2,996 tiles, 3 channels, with BaSiCPy flatfield and bounded phase correlation selected

AXIO Stitching Studio

MCP · CLI · SKILL · GUI · BY LABONOM

A high-throughput tile-scan stitcher for microscopy — Zeiss and vendor-neutral. It auto-detects five input formats, applies BaSiCPy flatfield (or median/spatial) shading correction, registers tiles by bounded phase correlation or SIFT with a Tikhonov-anchored global solve — or by pure stage coordinates — and feather-blends everything into 16-bit ImageJ-compatible TIFF mosaics. The same engine ships as a PySide6 desktop app, an axio CLI, and an MCP server with 17 typed tools, so both human and agent workflows use the same implementation.

  • 17 MCP tools
  • 5 auto-detected input formats
  • Multi-channel & Z-stacks
  • 3-channel fluorescence, live

Windows · macOS · Linux — PySide6 · Python

ShippingFree · MIT
Skill LibraryPipeline WorkshopMCP Endpoint